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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18140367_18140789_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18140367 - 18140789
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
GTTCTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATGT
Flanking Amino Acid:
NGLPGLDGISGPKGFPGPTG
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82
0.72
0.8
76.8
32
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
58.9
0.36
1.9
80.81
41.1

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220