Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18140853_18141424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18140853 - 18141424

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCACATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

AAAATCTTAATC

Flanking Amino Acid:

AGPIGLPGLQGPVGPPGPPG

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

0.9

72.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

77.2

0.61

0.9

75.7

33.4

Minor 5ss

32.4

-2

3.4

41.9

39.1

Minor BPS

62.9

0.39

1.2

63.53

35.4

Associated Gene:

Gene:

COL4A6

Ensembl Gene ID:

ENSAPLG00000013356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014088

18042267 - 18177486

135220