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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18141461_18141561_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18141461 - 18141561
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCACTCATTACT
Flanking Amino Acid:
VGPPGPPGPKGNMGLGFQGE
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.2
0.61
0.8
73
32
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
47.9
-0
1.9
67.02
43.1

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220