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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18142554_18143587_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18142554 - 18143587
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAAA
5'SS Class:
major
3'SS Sequence:
TTCCCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATGTTTACCT
Flanking Amino Acid:
GFPKGKQGEKGEPGLQGLPG
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
75.9
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.3
0.73
0.8
80
32
Minor 5ss
36.5
-1.5
2.5
42.3
44.5
Minor BPS
58.3
0.34
2
80.24
42

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220