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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18145085_18145814_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18145085 - 18145814
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
GCTACATAAAAT
Flanking Amino Acid:
KGVPGLPGGRGLLGLDGSDG
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.3
39.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
34.2
-1.8
3
36.5
40.9
Minor BPS
46.3
-0.2
2
64.19
45.3

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220