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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18146932_18148162_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18146932 - 18148162
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
PGLDGVEGTKGELGDIGPPG
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
80
0.75
1
78.6
31
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220