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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1814744_1815418_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1814744 - 1815418
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTGT
5'SS Class:
weak_major
3'SS Sequence:
TGTTCTTGTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTTTGGTAAACA
Flanking Amino Acid:
LIPQLGYVANGDGEVVEQVI
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.1
42.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
68.7
0.42
1.1
67.7
42.7
Minor 5ss
56.4
0.22
2.5
70.4
42.3
Minor BPS
46.3
-0.2
2.6
67.6
44.9

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076