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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18148233_18149779_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18148233 - 18149779
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACATT
5'SS Class:
major
3'SS Sequence:
GTTTGTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAG
U12 Branch Point Sequence:
GTTTGTCTAATA
Flanking Amino Acid:
VVDREGVVISGAPGDPGNPG
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
75.3
40.7
Major BPS
46.6
-0.2
1.5
58.3
39.2
Major PPT
71.1
0.48
1
66.6
39.5
Minor 5ss
43.6
-0.7
3.3
66.1
45
Minor BPS
50.7
0.02
2
68.43
38.4

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220