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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18149891_18150712_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18149891 - 18150712
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
CAATGTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATTGTGTCAATG
Flanking Amino Acid:
GAPGFPGLERDGMGPGGSPG
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
62.6
0.28
1
54.3
45.3
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
44
-0.5
2.2
52.99
42.6

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220