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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18153034_18153930_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18153034 - 18153930
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTGACTGTATTT
Flanking Amino Acid:
PGALGPKGFKGEAGDCACDG
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
72.5
37.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
81.3
0.7
0.9
72.8
41.9
Minor 5ss
33.1
-1.9
3.2
44.4
43.3
Minor BPS
46.2
-0.2
2.2
67.81
43.9

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220