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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18154092_18154967_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18154092 - 18154967
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTCTAATCT
Flanking Amino Acid:
VGAPGLRGPLASAGQQGLSG
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.7
0.74
0.7
78.1
30.8
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
64.5
0.53
1.9
87.15
38.9

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220