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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18155148_18156173_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18155148 - 18156173
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTGCTGTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCAGCTGTAATT
Flanking Amino Acid:
PGLPGPPGPPGDGALGFPGE
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
69.3
0.43
1
64
41.6
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
49.2
0.02
2.1
67.65
44.2

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220