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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18156358_18158940_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18156358 - 18158940
Intron Length:
2583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGTGTGCAAAGT
Flanking Amino Acid:
PGQAGLPGPPGITLPCIVPG
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
35.2
-1
2.5
56.08
46.3

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220