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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1815645_1816058_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1815645 - 1816058
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTACTAAATT
Flanking Amino Acid:
GFGCSKYYEKIPDQMFFHTD
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
71.1
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.1
0.81
0.8
80.6
31.4
Minor 5ss
32.7
-2
3.1
40.4
45.8
Minor BPS
64.3
0.53
1.8
83.35
37.8

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181