Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18159013_18159403_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18159013 - 18159403

Intron Length:

391

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CATTCATTAATA

Flanking Amino Acid:

PGIPGFPGLPGPKGSKGFPG

Intron Amino Acid Position:

679

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.4

40.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

85.2

0.79

0.8

82.4

Minor 5ss

37.7

-1.4

3.1

48.6

47.2

Minor BPS

0.56

1.6

73.8

37.9

Associated Gene:

Gene:

COL4A6

Ensembl Gene ID:

ENSAPLG00000013356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014088

18042267 - 18177486

135220