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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18159512_18160641_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18159512 - 18160641
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
ATTTCCTGTATT
Flanking Amino Acid:
PGIIGLQGEPGFPGPRGEQG
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
74.8
0.56
1
72.6
37.3
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
64
0.52
1.8
83.33
37.8

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220