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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18160864_18161127_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18160864 - 18161127
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTCTGTAACC
Flanking Amino Acid:
AGDIGFPGPKGLDGRPGLLG
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80
0.67
0.8
72.1
37.9
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
65.8
0.48
2
78.83
36.8

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220