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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18161290_18163273_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18161290 - 18163273
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTCTTGTATT
Flanking Amino Acid:
LGSVGLAGAPGLPGVKGLAG
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.6
32.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.9
0.51
1.1
70.1
44.8
Minor 5ss
35
-1.7
2.9
44.9
43.1
Minor BPS
55.9
0.27
1.8
76.12
40.9

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220