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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18164625_18164939_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18164625 - 18164939
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TATATAAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTATATAAACT
Flanking Amino Acid:
AGLGGFPGPRGDKGIPGSRG
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
64.2
0.32
1
60.6
43.7
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
56.9
0.29
2
81.54
39.8

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220