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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18165122_18165384_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18165122 - 18165384
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
GCTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGGGCTTTTATT
Flanking Amino Acid:
IGFPGMPGERGSDGITGPLG
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
51.9
0.14
1.7
67.81
43.6

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220