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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18165449_18165958_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18165449 - 18165958
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCTTCCTCACCT
Flanking Amino Acid:
PGPIGLPGPKGDQGEPLGVP
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
87.7
0.85
0.7
80.1
31.9
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
59.6
0.38
1.9
76.98
45.2

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220