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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18166553_18167142_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18166553 - 18167142
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAC
5'SS Class:
major
3'SS Sequence:
TGCTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAT
U12 Branch Point Sequence:
GATGCAAGAACA
Flanking Amino Acid:
PGDVGQEGPAGIPGNAGLRG
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.4
38.7
Major BPS
63.5
0.34
1.4
57.1
49.4
Major PPT
78.8
0.65
0.9
76.8
37.4
Minor 5ss
28.5
-2.5
3.6
40.8
45.8
Minor BPS
44.2
-0.4
2
57.14
41

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220