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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18167251_18167674_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18167251 - 18167674
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AATGTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTGTTCTTAATG
Flanking Amino Acid:
PGARGTAGPKGFHGFPGLNG
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.2
0.57
0.9
70.8
40.1
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
70.6
0.51
1.3
67.42
40.8

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220