About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18168318_18168676_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18168318 - 18168676
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAACACT
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGCTCTCACACT
Flanking Amino Acid:
PGPKGSSGDMGPPGPVGLPG
Intron Amino Acid Position:
1235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.7
42.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.6
0.76
0.8
77.1
37.1
Minor 5ss
40.9
-1
3
50.4
45.8
Minor BPS
43.6
-0.4
2.3
64.66
45.9

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220