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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18169686_18173647_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18169686 - 18173647
Intron Length:
3962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TGTATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
AGGTCTTCAGCT
Flanking Amino Acid:
IGLPGVSGFKGVRGEPGLMG
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
83.2
0.75
0.9
77.2
36.9
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
50.1
0.08
1.8
67.5
43.2

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220