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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18173747_18174025_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18173747 - 18174025
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACACTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CTGTCATTTACA
Flanking Amino Acid:
PGLKGEMGRRGLPGRPGAPG
Intron Amino Acid Position:
1361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
72.8
0.57
1
81
30.3
Major PPT
64.2
0.32
1.1
57.5
42.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
55.8
0.17
2
68.43
43.6

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220