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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18174173_18175118_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18174173 - 18175118
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTGTGTTTAATT
Flanking Amino Acid:
PGFQGPVGKPGTKGLPGRSG
Intron Amino Acid Position:
1410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
68
0.64
1.7
83.09
39.1

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220