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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18175236_18175966_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18175236 - 18175966
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
TTGCCTGTGAGT
Flanking Amino Acid:
VGTPGPQGFEGVAGKPGSLG
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
85.9
0.81
0.8
80.6
31.5
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
45.8
-0.2
2.3
67.82
43.7

Associated Gene:

Gene:
COL4A6
Ensembl Gene ID:
ENSAPLG00000013356
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014088
18042267 - 18177486
135220