About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1821308_1823163_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1821308 - 1823163
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTACTGCTATTT
Flanking Amino Acid:
EKMAELESHTDKVVAVQFCN
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
69.3
0.44
0.9
68
32.1
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
40.7
-0.6
2.3
62.42
41.9

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181