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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18219104_18219874_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18219104 - 18219874
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
CAGATCATACTT
Flanking Amino Acid:
FFKWKCCRSQLVASIVFISF
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.2
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
39.8
-1.1
3.1
48.3
42.4
Minor BPS
43
-0.4
1.8
53.87
42

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009267
18208929 - 18220060
11132