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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18219104_18223708_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18219104 - 18223708
Intron Length:
4605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
CAGATCATACTT
Flanking Amino Acid:
SNLIENKRQMLVASIVFISF
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
43
-0.4
1.8
53.87
42

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028621
18208609 - 18232469
23861