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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18223772_18228671_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18223772 - 18228671
Intron Length:
4900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTCCTGATCT
Flanking Amino Acid:
TVGGYYPGVILGFGSFLGII
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
84.4
0.77
0.8
81.2
36.5
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
67.5
0.63
1.8
84.91
41.5

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028621
18208609 - 18232469
23861