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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18223772_18254562_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18223772 - 18254562
Intron Length:
30791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTCCTGATCT
Flanking Amino Acid:
FLVKENKFAIAWFWVVSWNN
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
84.4
0.77
0.8
81.2
36.5
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
67.5
0.63
1.8
84.91
41.5

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046429
18220261 - 18266579
46319