Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18228815_18232100_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18228815 - 18232100

Intron Length:

3286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TATGTGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGCAA

U12 Branch Point Sequence:

AATTAGCAAATT

Flanking Amino Acid:

QDTSKRGKFGGSFNRRKRNS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.1

36.6

Major BPS

54.1

0.1

1.4

40.9

Major PPT

76.5

0.6

0.9

73.8

41.4

Minor 5ss

38.1

-1.3

3.1

49.4

46.8

Minor BPS

39.4

-0.7

2.5

61.23

42.5

Associated Gene:

Gene:

LAMP2

Ensembl Gene ID:

ENSAPLG00000009185

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028621

18208609 - 18232469

23861