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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18235269_18236999_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18235269 - 18236999
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTAACTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGTTCTGTAACT
Flanking Amino Acid:
NAASPGGKRLENKDEEKVQD
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
72.6
0.51
1
62.3
44
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
69
0.67
2
88.47
36.7

Associated Gene:

Gene:
ATP1B4
Ensembl Gene ID:
ENSAPLG00000009021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009430
18235222 - 18242297
7076