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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18237163_18238369_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18237163 - 18238369
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTCCT
5'SS Class:
major
3'SS Sequence:
CTCTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAC
U12 Branch Point Sequence:
GTTACACTGACA
Flanking Amino Acid:
TCLGRTAKSWGLILLFYFVF
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
66.3
45.2
Major BPS
55.1
0.13
1.2
66.7
40
Major PPT
79.1
0.65
0.8
72.8
32
Minor 5ss
35
-1.7
3.2
42.5
44.2
Minor BPS
48.8
-0.1
2
66.72
38.7

Associated Gene:

Gene:
ATP1B4
Ensembl Gene ID:
ENSAPLG00000009021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009430
18235222 - 18242297
7076