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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_182406_183606_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182406 - 183606
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
ATATTTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATT
Flanking Amino Acid:
SVFVAAAVITDFLRNIPDSV
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
62.7
44.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.2
0.54
1
71.8
42.2
Minor 5ss
46.2
-0.4
2.5
58.1
46.4
Minor BPS
68.4
0.66
1.4
80.25
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026082
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024377
178177 - 195376
17200
ENSAPLT00000022126
178177 - 195376
17200