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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18241549_18242115_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18241549 - 18242115
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CCCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
GCTCCCTCAGCA
Flanking Amino Acid:
YYPYYGKITHVNYTSPLVAM
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
77.9
38.6
Major BPS
53.3
0.08
1.1
59
36
Major PPT
82.4
0.73
0.7
79.6
25.8
Minor 5ss
36.5
-1.5
2.7
41.7
38.2
Minor BPS
50.2
0
1.8
62.35
43.3

Associated Gene:

Gene:
ATP1B4
Ensembl Gene ID:
ENSAPLG00000009021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009430
18235222 - 18242297
7076