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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1824657_1825311_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1824657 - 1825311
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
TTGTTGCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TGAAAAATAAAA
Flanking Amino Acid:
WQWHANTMKFKDRPVKFAER
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
71.6
0.49
1
67
39.6
Minor 5ss
43.2
-0.7
3.1
56.9
41.6
Minor BPS
40.7
-0.7
2
51.42
38.3

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076