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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18249535_18254562_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18249535 - 18254562
Intron Length:
5028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAC
Flanking Amino Acid:
FLVKENKFAIAEDCSPEVDN
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.8
0.81
0.7
86.1
27.2
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
56.7
0.19
1.6
67.06
38.8

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009572
18249336 - 18266579
17244