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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18253271_18254562_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18253271 - 18254562
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCTCATCT
Flanking Amino Acid:
FLVKENKFAIAQECSLDDDT
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
0.8
72.6
31.1
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
58.8
0.35
1.8
81.56
39.8

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042489
18252391 - 18266579
14189