About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1825413_1826727_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1825413 - 1826727
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTGAACTTAAAA
Flanking Amino Acid:
GHSASITSIQFSPARKGTTR
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.3
0.68
0.8
78.2
34.6
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
60.6
0.33
1.7
70.86
40.6

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181
ENSAPLT00000034186
1796175 - 1833250
37076