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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18254731_18255166_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18254731 - 18255166
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
TTTTTCTTCCCC
Flanking Amino Acid:
VTLLNHLNGSVILNADNNNF
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
72.5
0.51
0.9
71.8
32.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
46.3
-0.3
3.6
77.35
39.1

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009572
18249336 - 18266579
17244
ENSAPLT00000046429
18220261 - 18266579
46319
ENSAPLT00000042489
18252391 - 18266579
14189