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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18257136_18257931_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18257136 - 18257931
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTGTGTTAAAA
Flanking Amino Acid:
FVQNGTIGKTETRCHADTPT
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.7
0.69
0.8
77.4
35.9
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
52.4
0.07
2.2
71.75
40.6

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046429
18220261 - 18266579
46319
ENSAPLT00000042489
18252391 - 18266579
14189
ENSAPLT00000009572
18249336 - 18266579
17244