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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18258094_18258727_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18258094 - 18258727
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTATCC
5'SS Class:
major
3'SS Sequence:
TGCTTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGGTATTAAAAT
Flanking Amino Acid:
AAVFPDAKRKGLVTVVVKDS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.3
37.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.8
0.63
0.9
72.8
37.5
Minor 5ss
37.9
-1.4
3.3
51.7
45
Minor BPS
46.2
-0.2
1.9
61.25
42.3

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046429
18220261 - 18266579
46319
ENSAPLT00000042489
18252391 - 18266579
14189
ENSAPLT00000009572
18249336 - 18266579
17244