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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18258942_18259410_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18258942 - 18259410
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTATCTGAAAA
Flanking Amino Acid:
IKYETNSSDYKNASLDLPST
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
55.8
0.18
1.6
67.3
38.2

Associated Gene:

Gene:
LAMP2
Ensembl Gene ID:
ENSAPLG00000009185
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046429
18220261 - 18266579
46319
ENSAPLT00000042489
18252391 - 18266579
14189
ENSAPLT00000009572
18249336 - 18266579
17244