About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1826950_1827114_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1826950 - 1827114
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTGTGGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAATC
Flanking Amino Acid:
FDRSGRRIFTGSDDCLVKIW
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73
0.52
1
70.2
41.3
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
60
0.29
1.8
75.96
34.2

Associated Gene:

Gene:
BRWD3
Ensembl Gene ID:
ENSAPLG00000009512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034186
1796175 - 1833250
37076
ENSAPLT00000023756
1796175 - 1835355
39181
ENSAPLT00000010014
1796175 - 1835355
39181