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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18278466_18279619_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18278466 - 18279619
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAGTAC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
VYNQLKFPVKPADLKKRIES
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
61.2
33.6
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
37
-1.5
3.3
48.7
47.8
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723