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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18279510_18279619_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18279510 - 18279619
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAGTAC
5'SS Class:
major
3'SS Sequence:
TTTTAACTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
VYNQLKFPVKERQILNFRNF
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
61.2
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
71.6
0.49
1
71.3
39.5
Minor 5ss
37
-1.5
3.3
48.7
47.8
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042369
18279431 - 18298092
18662