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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18281314_18281494_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18281314 - 18281494
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
VPMEVHLPPEMVKLQEIFKT
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
79.7
0.67
0.8
77.5
29.9
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662